Package: InfiniumPurify 1.3.1
InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis
The proportion of cancer cells in solid tumor sample, known as the tumor purity, has adverse impact on a variety of data analyses if not properly accounted for. We develop 'InfiniumPurify', which is a comprehensive R package for estimating and accounting for tumor purity based on DNA methylation Infinium 450k array data. 'InfiniumPurify' provides functionalities for tumor purity estimation. In addition, it can perform differential methylation detection and tumor sample clustering with the consideration of tumor purities.
Authors:
InfiniumPurify_1.3.1.tar.gz
InfiniumPurify_1.3.1.zip(r-4.5)InfiniumPurify_1.3.1.zip(r-4.4)InfiniumPurify_1.3.1.zip(r-4.3)
InfiniumPurify_1.3.1.tgz(r-4.4-any)InfiniumPurify_1.3.1.tgz(r-4.3-any)
InfiniumPurify_1.3.1.tar.gz(r-4.5-noble)InfiniumPurify_1.3.1.tar.gz(r-4.4-noble)
InfiniumPurify_1.3.1.tgz(r-4.4-emscripten)InfiniumPurify_1.3.1.tgz(r-4.3-emscripten)
InfiniumPurify.pdf |InfiniumPurify.html✨
InfiniumPurify/json (API)
| # Install 'InfiniumPurify' in R: |
| install.packages('InfiniumPurify', repos = c('https://aipao757.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:212851ade8. Checks:3 OK, 4 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 25 2025 |
| R-4.5-win | OK | Jan 25 2025 |
| R-4.5-linux | OK | Jan 25 2025 |
| R-4.4-win | NOTE | Jan 25 2025 |
| R-4.4-mac | NOTE | Jan 25 2025 |
| R-4.3-win | NOTE | Jan 25 2025 |
| R-4.3-mac | NOTE | Jan 25 2025 |
Exports:CancerTypeAbbrgetPurityInfiniumClustInfiniumDMCInfiniumPurify
Dependencies:matrixStats
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| abbr | abbr |
| beta.emp | beta.emp |
| Print abbreviations of cancer types with known iDMCs. | CancerTypeAbbr |
| Estimate the tumor purity for 450K methylation data | getPurity |
| iDMC | iDMC |
| Tumor sample clustering from Infinium 450k array data | InfiniumClust |
| Differentially Methylation Calling accounting for tumor purity | InfiniumDMC |
| Purify tumor methylomes caused by normal cell contamination. | InfiniumPurify |
