Package: InfiniumPurify 1.3.1

InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis

The proportion of cancer cells in solid tumor sample, known as the tumor purity, has adverse impact on a variety of data analyses if not properly accounted for. We develop 'InfiniumPurify', which is a comprehensive R package for estimating and accounting for tumor purity based on DNA methylation Infinium 450k array data. 'InfiniumPurify' provides functionalities for tumor purity estimation. In addition, it can perform differential methylation detection and tumor sample clustering with the consideration of tumor purities.

Authors:Yufang Qin

InfiniumPurify_1.3.1.tar.gz
InfiniumPurify_1.3.1.zip(r-4.7)InfiniumPurify_1.3.1.zip(r-4.6)InfiniumPurify_1.3.1.zip(r-4.5)
InfiniumPurify_1.3.1.tgz(r-4.6-any)InfiniumPurify_1.3.1.tgz(r-4.5-any)
InfiniumPurify_1.3.1.tar.gz(r-4.7-any)InfiniumPurify_1.3.1.tar.gz(r-4.6-any)
InfiniumPurify_1.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
InfiniumPurify/json (API)

# Install 'InfiniumPurify' in R:
install.packages('InfiniumPurify', repos = c('https://aipao757.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.15 score 14 scripts 254 downloads 12 mentions 5 exports 1 dependencies

Last updated from:212851ade8. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK101
source / vignettesOK157
linux-release-x86_64OK101
macos-release-arm64OK171
macos-oldrel-arm64OK191
windows-develOK74
windows-releaseOK65
windows-oldrelOK65
wasm-releaseOK98

Exports:CancerTypeAbbrgetPurityInfiniumClustInfiniumDMCInfiniumPurify

Dependencies:matrixStats