{
  "_id": "6a634cdaaecbde9870bb1ef7",
  "Package": "InfiniumPurify",
  "Type": "Package",
  "Title": "Estimate and Account for Tumor Purity in Cancer Methylation Data\nAnalysis",
  "Version": "1.3.1",
  "Date": "2017-1-8",
  "Author": "Yufang Qin",
  "Maintainer": "Yufang Qin <yfqin@shou.edu.cn>",
  "Description": "The proportion of cancer cells in solid tumor sample,\nknown as the tumor purity, has adverse impact on a variety of\ndata analyses if not properly accounted for. We develop\n'InfiniumPurify', which is a comprehensive R package for\nestimating and accounting for tumor purity based on DNA\nmethylation Infinium 450k array data. 'InfiniumPurify' provides\nfunctionalities for tumor purity estimation. In addition, it\ncan perform differential methylation detection and tumor sample\nclustering with the consideration of tumor purities.",
  "License": "GPL-2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-24 09:22:04 UTC",
    "User": "root"
  },
  "Repository": "https://aipao757.r-universe.dev",
  "Date/Publication": "2017-01-14 11:12:25 UTC",
  "RemoteUrl": "https://github.com/cran/InfiniumPurify",
  "RemoteRef": "HEAD",
  "RemoteSha": "212851ade813327d3a88daba5b99a26ae6f77912",
  "_user": "aipao757",
  "_type": "src",
  "_file": "InfiniumPurify_1.3.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/52a324b1ade3f93bdc76b2de120ea680635a175aa2a4491f205421d73953495f",
  "_filesize": 928365,
  "_sha256": "52a324b1ade3f93bdc76b2de120ea680635a175aa2a4491f205421d73953495f",
  "_expires": "2026-11-01T11:30:32.000Z",
  "_created": "2026-07-24T09:22:04.000Z",
  "_published": "2026-07-24T11:30:34.537Z",
  "_jobs": [
    {
      "job": 89446538160,
      "time": 120,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8592341527"
    },
    {
      "job": 89446538103,
      "time": 114,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8592339654"
    },
    {
      "job": 89446538172,
      "time": 94,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8595180142"
    },
    {
      "job": 89446538120,
      "time": 71,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8595003970"
    },
    {
      "job": 89445947864,
      "time": 175,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8592293254"
    },
    {
      "job": 89446538144,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8592332984"
    },
    {
      "job": 89446538158,
      "time": 69,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8592322512"
    },
    {
      "job": 89446538207,
      "time": 87,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8592329878"
    },
    {
      "job": 89446538183,
      "time": 72,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8592323906"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394",
  "_status": "success",
  "_upstream": "https://github.com/cran/InfiniumPurify",
  "_commit": {
    "id": "212851ade813327d3a88daba5b99a26ae6f77912",
    "author": "Yufang Qin <yfqin@shou.edu.cn>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3.1\n",
    "time": 1484392345
  },
  "_maintainer": {
    "name": "Yufang Qin",
    "email": "yfqin@shou.edu.cn",
    "login": "aipao757",
    "description": "",
    "uuid": 71809588
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "matrixStats",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "aipao757",
      "count": 1,
      "uuid": 71809588
    }
  ],
  "_userbio": {
    "uuid": 71809588,
    "type": "user",
    "name": "aipao757",
    "followers": 0
  },
  "_downloads": {
    "count": 215,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/InfiniumPurify"
  },
  "_mentions": 12,
  "_searchresults": 14,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/InfiniumPurify.html",
    "manual.pdf"
  ],
  "_realowner": "aipao757",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.3.1",
      "date": "2017-01-14"
    }
  ],
  "_exports": [
    "CancerTypeAbbr",
    "getPurity",
    "InfiniumClust",
    "InfiniumDMC",
    "InfiniumPurify"
  ],
  "_datasets": [
    {
      "name": "abbr",
      "title": "abbr",
      "object": "abbr",
      "file": "abbr.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Abbreviation",
        "Cancer.type"
      ],
      "rows": 32,
      "table": true,
      "tojson": true
    },
    {
      "name": "beta.emp",
      "title": "beta.emp",
      "object": "beta.emp",
      "file": "beta.emp.RData",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "TCGA-44-2662-11A-01D-1551-05",
        "TCGA-44-2656-11A-01D-1551-05",
        "TCGA-44-2659-11A-01D-1551-05",
        "TCGA-50-5936-11A-01D-1626-05",
        "TCGA-44-5645-11A-01D-1626-05",
        "TCGA-05-5420-11A-01D-1626-05",
        "TCGA-50-5939-11A-01D-1626-05",
        "TCGA-50-5935-11A-01D-1756-05",
        "TCGA-50-6593-11A-01D-1756-05",
        "TCGA-38-4632-11A-01D-1756-05",
        "TCGA-44-6145-11A-01D-1756-05",
        "TCGA-44-6146-11A-01D-1756-05",
        "TCGA-50-5933-11A-01D-1756-05",
        "TCGA-50-5932-11A-01D-1756-05",
        "TCGA-73-4676-11A-01D-1756-05",
        "TCGA-49-4488-11A-01D-1756-05",
        "TCGA-73-4658-11A-01D-1756-05",
        "TCGA-44-6147-11A-01D-1756-05",
        "TCGA-38-4631-11A-01D-1756-05",
        "TCGA-50-5931-11A-01D-1756-05",
        "TCGA-49-6745-11A-01D-1856-05",
        "TCGA-67-6217-01A-11D-1756-05",
        "TCGA-50-5942-01A-21D-1756-05",
        "TCGA-67-6215-01A-11D-1756-05",
        "TCGA-38-6178-01A-11D-1756-05",
        "TCGA-73-4676-01A-01D-1756-05",
        "TCGA-49-4488-01A-01D-1756-05",
        "TCGA-75-6207-01A-11D-1756-05",
        "TCGA-50-5933-01A-11D-1756-05",
        "TCGA-73-4658-01A-01D-1756-05",
        "TCGA-50-5941-01A-11D-1756-05",
        "TCGA-50-5931-01A-11D-1756-05",
        "TCGA-75-5122-01A-01D-1756-05",
        "TCGA-67-6216-01A-11D-1756-05",
        "TCGA-75-6212-01A-11D-1756-05",
        "TCGA-75-7031-01A-11D-1947-05",
        "TCGA-55-6981-01A-11D-1947-05",
        "TCGA-91-6828-01A-11D-1856-05",
        "TCGA-50-6595-01A-12D-1856-05",
        "TCGA-44-6779-01A-11D-1856-05",
        "TCGA-49-4487-01A-21D-1856-05",
        "TCGA-55-6712-01A-11D-1856-05",
        "TCGA-50-5936-01A-11D-1626-05",
        "TCGA-44-6146-01A-11D-1756-05",
        "TCGA-55-6983-01A-11D-1947-05",
        "TCGA-05-5715-01A-01D-1626-05",
        "TCGA-49-6744-01A-11D-1856-05",
        "TCGA-64-5774-01A-01D-1626-05",
        "TCGA-05-4390-01A-02D-1756-05",
        "TCGA-05-4425-01A-01D-1756-05",
        "TCGA-38-4632-01A-01D-1756-05",
        "TCGA-38-4631-01A-01D-1756-05",
        "TCGA-05-4433-01A-22D-1856-05",
        "TCGA-50-5044-01A-21D-1856-05",
        "TCGA-05-4410-01A-21D-1856-05",
        "TCGA-05-4415-01A-22D-1856-05",
        "TCGA-50-5944-01A-11D-1756-05",
        "TCGA-75-5126-01A-01D-1756-05",
        "TCGA-80-5608-01A-31D-1947-05",
        "TCGA-71-6725-01A-11D-1856-05",
        "TCGA-55-6543-01A-11D-1756-05"
      ],
      "rows": 1417,
      "table": true,
      "tojson": true
    },
    {
      "name": "iDMC",
      "title": "iDMC",
      "object": "iDMC",
      "file": "iDMC.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "abbr",
      "title": "abbr",
      "topics": [
        "abbr"
      ]
    },
    {
      "page": "beta.emp",
      "title": "beta.emp",
      "topics": [
        "beta.emp"
      ]
    },
    {
      "page": "CancerTypeAbbr",
      "title": "Print abbreviations of cancer types with known iDMCs.",
      "topics": [
        "CancerTypeAbbr"
      ]
    },
    {
      "page": "getPurity",
      "title": "Estimate the tumor purity for 450K methylation data",
      "topics": [
        "getPurity"
      ]
    },
    {
      "page": "iDMC",
      "title": "iDMC",
      "topics": [
        "iDMC"
      ]
    },
    {
      "page": "InfiniumClust",
      "title": "Tumor sample clustering from Infinium 450k array data",
      "topics": [
        "InfiniumClust"
      ]
    },
    {
      "page": "InfiniumDMC",
      "title": "Differentially Methylation Calling accounting for tumor purity",
      "topics": [
        "InfiniumDMC"
      ]
    },
    {
      "page": "InfiniumPurify",
      "title": "Purify tumor methylomes caused by normal cell contamination.",
      "topics": [
        "InfiniumPurify"
      ]
    }
  ],
  "_rundeps": [
    "matrixStats"
  ],
  "_score": 2.146128035678238,
  "_indexed": true,
  "_nocasepkg": "infiniumpurify",
  "_universes": [
    "aipao757"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-07-24T09:24:07.000Z",
      "distro": "resolute",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/19ca61a133ae7db217fc433ce43161c29c77c4cde0403e7138b85a69cc0cc201",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-07-24T09:23:59.000Z",
      "distro": "resolute",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/a78d043433308a3efa6863c1f2d5c668bc88f7a01437413a5c9f1713981089a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-07-24T11:29:57.000Z",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/7b80108488aabb4d1a55be96070756189e083de488c918fb13af13f1f1412f3c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-07-24T11:21:40.000Z",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/ccea7596d941528deeb0a9e17544ae35ba606359d79c2d762e8957cd5be8698f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.1",
      "date": "2026-07-24T09:24:00.000Z",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/30ea6ddc5d0c324907dbbfdb624522fbabdf5ca06633b636ff734eccbad59612",
      "status": "success",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-07-24T09:23:09.000Z",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/64479bce6f870c374b43496c7dd01c9a6cfd85e99d7c36e329a4098abfbec028",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-07-24T09:23:28.000Z",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/f4fd627fb1acc1e25ecab720d889ba430f050eb284faf868f192b80cc4cdb306",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-07-24T09:23:12.000Z",
      "commit": "212851ade813327d3a88daba5b99a26ae6f77912",
      "fileid": "https://r2.ropensci.org/0a8def4b3c4811aa83c8c8daa599d193c76e2c367d3145e8e2a7462697de3e91",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aipao757/actions/runs/30082126394"
    }
  ]
}